1.1 --- /dev/null Thu Jan 01 00:00:00 1970 +0000
1.2 +++ b/build/pgo/js-input/string-fasta.html Wed Dec 31 06:09:35 2014 +0100
1.3 @@ -0,0 +1,135 @@
1.4 +<!DOCTYPE html>
1.5 +<head>
1.6 +<!--
1.7 + Copyright (C) 2007 Apple Inc. All rights reserved.
1.8 +
1.9 + Redistribution and use in source and binary forms, with or without
1.10 + modification, are permitted provided that the following conditions
1.11 + are met:
1.12 + 1. Redistributions of source code must retain the above copyright
1.13 + notice, this list of conditions and the following disclaimer.
1.14 + 2. Redistributions in binary form must reproduce the above copyright
1.15 + notice, this list of conditions and the following disclaimer in the
1.16 + documentation and/or other materials provided with the distribution.
1.17 +
1.18 + THIS SOFTWARE IS PROVIDED BY APPLE COMPUTER, INC. ``AS IS'' AND ANY
1.19 + EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
1.20 + IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
1.21 + PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL APPLE COMPUTER, INC. OR
1.22 + CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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1.24 + PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
1.25 + PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
1.26 + OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
1.27 + (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
1.28 + OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
1.29 +-->
1.30 +
1.31 +<title>SunSpider string-fasta</title>
1.32 +
1.33 +</head>
1.34 +
1.35 +<body>
1.36 +<h3>string-fasta</h3>
1.37 +<div id="console">
1.38 +</div>
1.39 +
1.40 +<script>
1.41 +
1.42 +var _sunSpiderStartDate = new Date();
1.43 +
1.44 +// The Great Computer Language Shootout
1.45 +// http://shootout.alioth.debian.org
1.46 +//
1.47 +// Contributed by Ian Osgood
1.48 +
1.49 +var last = 42, A = 3877, C = 29573, M = 139968;
1.50 +
1.51 +function rand(max) {
1.52 + last = (last * A + C) % M;
1.53 + return max * last / M;
1.54 +}
1.55 +
1.56 +var ALU =
1.57 + "GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG" +
1.58 + "GAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA" +
1.59 + "CCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAT" +
1.60 + "ACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCA" +
1.61 + "GCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGG" +
1.62 + "AGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCC" +
1.63 + "AGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA";
1.64 +
1.65 +var IUB = {
1.66 + a:0.27, c:0.12, g:0.12, t:0.27,
1.67 + B:0.02, D:0.02, H:0.02, K:0.02,
1.68 + M:0.02, N:0.02, R:0.02, S:0.02,
1.69 + V:0.02, W:0.02, Y:0.02
1.70 +}
1.71 +
1.72 +var HomoSap = {
1.73 + a: 0.3029549426680,
1.74 + c: 0.1979883004921,
1.75 + g: 0.1975473066391,
1.76 + t: 0.3015094502008
1.77 +}
1.78 +
1.79 +function makeCumulative(table) {
1.80 + var last = null;
1.81 + for (var c in table) {
1.82 + if (last) table[c] += table[last];
1.83 + last = c;
1.84 + }
1.85 +}
1.86 +
1.87 +function fastaRepeat(n, seq) {
1.88 + var seqi = 0, lenOut = 60;
1.89 + while (n>0) {
1.90 + if (n<lenOut) lenOut = n;
1.91 + if (seqi + lenOut < seq.length) {
1.92 + ret = seq.substring(seqi, seqi+lenOut);
1.93 + seqi += lenOut;
1.94 + } else {
1.95 + var s = seq.substring(seqi);
1.96 + seqi = lenOut - s.length;
1.97 + ret = s + seq.substring(0, seqi);
1.98 + }
1.99 + n -= lenOut;
1.100 + }
1.101 +}
1.102 +
1.103 +function fastaRandom(n, table) {
1.104 + var line = new Array(60);
1.105 + makeCumulative(table);
1.106 + while (n>0) {
1.107 + if (n<line.length) line = new Array(n);
1.108 + for (var i=0; i<line.length; i++) {
1.109 + var r = rand(1);
1.110 + for (var c in table) {
1.111 + if (r < table[c]) {
1.112 + line[i] = c;
1.113 + break;
1.114 + }
1.115 + }
1.116 + }
1.117 + ret = line.join('');
1.118 + n -= line.length;
1.119 + }
1.120 +}
1.121 +
1.122 +var ret;
1.123 +
1.124 +var count = 7;
1.125 +ret = fastaRepeat(2*count*100000, ALU);
1.126 +ret = fastaRandom(3*count*1000, IUB);
1.127 +ret = fastaRandom(5*count*1000, HomoSap);
1.128 +
1.129 +
1.130 +
1.131 +var _sunSpiderInterval = new Date() - _sunSpiderStartDate;
1.132 +
1.133 +document.getElementById("console").innerHTML = _sunSpiderInterval;
1.134 +</script>
1.135 +
1.136 +
1.137 +</body>
1.138 +</html>
