build/pgo/js-input/string-fasta.html@6474c204b198 (annotated)
build/pgo/js-input/string-fasta.html
Wed, 31 Dec 2014 06:09:35 +0100
- author
- Michael Schloh von Bennewitz <michael@schloh.com>
- date
- Wed, 31 Dec 2014 06:09:35 +0100
- changeset 0
- 6474c204b198
- permissions
- -rw-r--r--
Cloned upstream origin tor-browser at tor-browser-31.3.0esr-4.5-1-build1
revision ID fc1c9ff7c1b2defdbc039f12214767608f46423f for hacking purpose.
| michael@0 | 1 | <!DOCTYPE html> |
| michael@0 | 2 | <head> |
| michael@0 | 3 | <!-- |
| michael@0 | 4 | Copyright (C) 2007 Apple Inc. All rights reserved. |
| michael@0 | 5 | |
| michael@0 | 6 | Redistribution and use in source and binary forms, with or without |
| michael@0 | 7 | modification, are permitted provided that the following conditions |
| michael@0 | 8 | are met: |
| michael@0 | 9 | 1. Redistributions of source code must retain the above copyright |
| michael@0 | 10 | notice, this list of conditions and the following disclaimer. |
| michael@0 | 11 | 2. Redistributions in binary form must reproduce the above copyright |
| michael@0 | 12 | notice, this list of conditions and the following disclaimer in the |
| michael@0 | 13 | documentation and/or other materials provided with the distribution. |
| michael@0 | 14 | |
| michael@0 | 15 | THIS SOFTWARE IS PROVIDED BY APPLE COMPUTER, INC. ``AS IS'' AND ANY |
| michael@0 | 16 | EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE |
| michael@0 | 17 | IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR |
| michael@0 | 18 | PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL APPLE COMPUTER, INC. OR |
| michael@0 | 19 | CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, |
| michael@0 | 20 | EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, |
| michael@0 | 21 | PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR |
| michael@0 | 22 | PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY |
| michael@0 | 23 | OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT |
| michael@0 | 24 | (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
| michael@0 | 25 | OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| michael@0 | 26 | --> |
| michael@0 | 27 | |
| michael@0 | 28 | <title>SunSpider string-fasta</title> |
| michael@0 | 29 | |
| michael@0 | 30 | </head> |
| michael@0 | 31 | |
| michael@0 | 32 | <body> |
| michael@0 | 33 | <h3>string-fasta</h3> |
| michael@0 | 34 | <div id="console"> |
| michael@0 | 35 | </div> |
| michael@0 | 36 | |
| michael@0 | 37 | <script> |
| michael@0 | 38 | |
| michael@0 | 39 | var _sunSpiderStartDate = new Date(); |
| michael@0 | 40 | |
| michael@0 | 41 | // The Great Computer Language Shootout |
| michael@0 | 42 | // http://shootout.alioth.debian.org |
| michael@0 | 43 | // |
| michael@0 | 44 | // Contributed by Ian Osgood |
| michael@0 | 45 | |
| michael@0 | 46 | var last = 42, A = 3877, C = 29573, M = 139968; |
| michael@0 | 47 | |
| michael@0 | 48 | function rand(max) { |
| michael@0 | 49 | last = (last * A + C) % M; |
| michael@0 | 50 | return max * last / M; |
| michael@0 | 51 | } |
| michael@0 | 52 | |
| michael@0 | 53 | var ALU = |
| michael@0 | 54 | "GGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGG" + |
| michael@0 | 55 | "GAGGCCGAGGCGGGCGGATCACCTGAGGTCAGGAGTTCGAGA" + |
| michael@0 | 56 | "CCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAT" + |
| michael@0 | 57 | "ACAAAAATTAGCCGGGCGTGGTGGCGCGCGCCTGTAATCCCA" + |
| michael@0 | 58 | "GCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGG" + |
| michael@0 | 59 | "AGGCGGAGGTTGCAGTGAGCCGAGATCGCGCCACTGCACTCC" + |
| michael@0 | 60 | "AGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAA"; |
| michael@0 | 61 | |
| michael@0 | 62 | var IUB = { |
| michael@0 | 63 | a:0.27, c:0.12, g:0.12, t:0.27, |
| michael@0 | 64 | B:0.02, D:0.02, H:0.02, K:0.02, |
| michael@0 | 65 | M:0.02, N:0.02, R:0.02, S:0.02, |
| michael@0 | 66 | V:0.02, W:0.02, Y:0.02 |
| michael@0 | 67 | } |
| michael@0 | 68 | |
| michael@0 | 69 | var HomoSap = { |
| michael@0 | 70 | a: 0.3029549426680, |
| michael@0 | 71 | c: 0.1979883004921, |
| michael@0 | 72 | g: 0.1975473066391, |
| michael@0 | 73 | t: 0.3015094502008 |
| michael@0 | 74 | } |
| michael@0 | 75 | |
| michael@0 | 76 | function makeCumulative(table) { |
| michael@0 | 77 | var last = null; |
| michael@0 | 78 | for (var c in table) { |
| michael@0 | 79 | if (last) table[c] += table[last]; |
| michael@0 | 80 | last = c; |
| michael@0 | 81 | } |
| michael@0 | 82 | } |
| michael@0 | 83 | |
| michael@0 | 84 | function fastaRepeat(n, seq) { |
| michael@0 | 85 | var seqi = 0, lenOut = 60; |
| michael@0 | 86 | while (n>0) { |
| michael@0 | 87 | if (n<lenOut) lenOut = n; |
| michael@0 | 88 | if (seqi + lenOut < seq.length) { |
| michael@0 | 89 | ret = seq.substring(seqi, seqi+lenOut); |
| michael@0 | 90 | seqi += lenOut; |
| michael@0 | 91 | } else { |
| michael@0 | 92 | var s = seq.substring(seqi); |
| michael@0 | 93 | seqi = lenOut - s.length; |
| michael@0 | 94 | ret = s + seq.substring(0, seqi); |
| michael@0 | 95 | } |
| michael@0 | 96 | n -= lenOut; |
| michael@0 | 97 | } |
| michael@0 | 98 | } |
| michael@0 | 99 | |
| michael@0 | 100 | function fastaRandom(n, table) { |
| michael@0 | 101 | var line = new Array(60); |
| michael@0 | 102 | makeCumulative(table); |
| michael@0 | 103 | while (n>0) { |
| michael@0 | 104 | if (n<line.length) line = new Array(n); |
| michael@0 | 105 | for (var i=0; i<line.length; i++) { |
| michael@0 | 106 | var r = rand(1); |
| michael@0 | 107 | for (var c in table) { |
| michael@0 | 108 | if (r < table[c]) { |
| michael@0 | 109 | line[i] = c; |
| michael@0 | 110 | break; |
| michael@0 | 111 | } |
| michael@0 | 112 | } |
| michael@0 | 113 | } |
| michael@0 | 114 | ret = line.join(''); |
| michael@0 | 115 | n -= line.length; |
| michael@0 | 116 | } |
| michael@0 | 117 | } |
| michael@0 | 118 | |
| michael@0 | 119 | var ret; |
| michael@0 | 120 | |
| michael@0 | 121 | var count = 7; |
| michael@0 | 122 | ret = fastaRepeat(2*count*100000, ALU); |
| michael@0 | 123 | ret = fastaRandom(3*count*1000, IUB); |
| michael@0 | 124 | ret = fastaRandom(5*count*1000, HomoSap); |
| michael@0 | 125 | |
| michael@0 | 126 | |
| michael@0 | 127 | |
| michael@0 | 128 | var _sunSpiderInterval = new Date() - _sunSpiderStartDate; |
| michael@0 | 129 | |
| michael@0 | 130 | document.getElementById("console").innerHTML = _sunSpiderInterval; |
| michael@0 | 131 | </script> |
| michael@0 | 132 | |
| michael@0 | 133 | |
| michael@0 | 134 | </body> |
| michael@0 | 135 | </html> |
